PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010088597.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 341aa    MW: 38169.2 Da    PI: 6.9994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010088597.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000255981123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  XP_010088597.1 59 YSCSFCRREFRSAQALGGHMNVH 81
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.01E-65685No hitNo description
PROSITE profilePS5015711.2195986IPR007087Zinc finger, C2H2
SMARTSM003550.00985981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEARHWVWA KRKRGLISTS HDPHVPNKAS SYDDSWEEQA FAEDASGPLG GCIWPPRSYS  60
CSFCRREFRS AQALGGHMNV HRRDRARLKQ SPPDLHREIL HQNHLHNNNI PVQNSIPLIT  120
SFGQPQYPSQ VCALVYSPNP NSDHDPATAN FIAPPPPCKQ SCHDKQVLIP PFNSSSSSSS  180
SPLLQENNKK SSNIIISPSS QSWSNLARTD RYNHNNISNQ KNHIGGHKIS TITHVESAGS  240
CRAKGDYHVK TDLSVSLNLV VCHSCPTLSG TGEEEETTMS CKKRRITDSS LQTSPRLVES  300
HDDDDDVPRS TELAFELSQD CSEEDLDLEL RLGDRPYKVK Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2l1o_A1e-125481229Transcriptional regulator SUPERMAN
1njq_A1e-125481229superman protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090994e-58AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088597.10.0putative transcriptional regulator RABBIT EARS
TrEMBLW9QG650.0W9QG65_9R
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10